Open Source Algorithms

Identification and scoring of cancer markers by Immunohistochemistry has been shown to be of value in determining the aggressiveness of specific cancers, as well as in predicting patient outcome for many cancer types. Despite its routine clinical use, a problem with the standard scoring method is the inherent subjectivity and variability of purely visual inspection. To diminish this visual perception biasing, IHC profiler has been developed as a standard automated scoring tool. -x-x-x-x-x-x-x- Full Publication and Citation: Varghese F, Bukhari AB, Malhotra R, De A (2014) IHC Profiler: An Open Source Plugin for the Quantitative Evaluation and Automated Scoring of Immunohistochemistry Images of Human Tissue Samples. PLoS ONE 9(5): e96801. doi:10.1371/journal.pone.0096801 Link: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0096801 -x-x-x-x-x-x-x- Your feedback would be highly appreciated. Please rate so we can work on improving it further. Thank you!

iat is Iso9660 Analyzer Tool, this tool have engine for detect many structure of image file

La suite logicielle Monia est destinée à l'apprentissage de l'algorithmique en français. Elle permet de fabriquer un exécutable à partir d'un organigramme, en passant par un programme procédural écrit en pseudo-langage.

minidjvu is a DjVu encoder for black-and-white images.

A univariate and multivariate analysis UI. This project is no longer under development. Please use as you wish.

Programmer's library for random numbers. Also random number generator testing code. Intended for simulation, games and "Monte-Carlo" algorithms.

Game Toolbox is a C# assembly designed to facilitate the creation of games and game prototypes. It contains no graphics code, does not depend on XNA, and is Mono-compatible. It provides implementations of A*, GOAP, a genetic algorithm, and more.

The Adobe Source Libraries (ASL) are a collection of C++ libraries building foundation technology to allow the construction of commercial applications by assembling generic algorithms through declarative descriptions.

This library contains Java code for several Read-Write Locks: - ScalableRWLock: A rw-lock that scales with the number of threads doing read-lock. - ScalableRWLockS: Similar to above but different implementation. - ScalableStampedRWLock: An hybrid of the ScalableRWLock and the StampedLock provided in JDK 8, which provides good overall performance. - FAARWLock: Uses a Fetch-And-Add operation for the read-lock which means it is not so scalable as ScalableRWLock but it is still faster than classical implementations

This is a tool that uses a combination between a brute force and dictionary attack on a Vigenere cipher. At present, keys are generated using brute force (will soon try passwords generated from a dictionary first). Each key is then used to decode the encoded message input. The output is analysed and then put into a ranking table. Outputs will be ranked on a variety of factors (at present, only number of dictionary words in output are counted). For the future: Better key generation, trying combinations of dictionary words with numbers. If that fails, brute force will be used. For all attempts of the dictionary attack, only keys within the known key length range will be generated. Better ranking system and analysis of possible decoded messages. Note: The version currently released, I made in an evening! It is nowhere near ready for release but is a fun project to think about and I need more ideas for improvements mentioned above. Discuss possible solutions and ideas!

User AES-128 bit encryption in counter mode of operation. supports interactive mode of operation and command line mode of operation.

Java Machine Learning Library is a library of machine learning algorithms and related datasets. Machine learning techniques include: clustering, classification, feature selection, regression, data pre-processing, ensemble learning, voting, ...

Membrane Computing is a new research area (within Natural Computing) that aims to provide computing devices abstracted from the functioning and structure of living cells. These devices are called P systems. The objective of this project (PMCGPU) is to bring together all the researchers working on the development of parallel simulators for P systems, specially those using the GPU (e.g. CUDA, OpenCL, etc). Other parallel platforms are also welcome (multicore and manycore, FPGAs, etc). This project has been initiated by the Research Group on Natural Computing (Department of Computer Science and Artificial Intelligence, University of Seville). PMCGPU was born inside the P-Lingua project, of the same research group. PMCGPU is a GNU project, so all the applications developed within it are released under the GPLv3 license. Just contact us if you want to participate. Please, visit the Wiki of the project for further information.

C++ Library of Abstract Algebra concepts and arithmetic algorithms defined in terms of these concepts, using Instigate Generic Programming Methodology. Based on this library we plan to develop Linear Algebra and Optimization concepts and algorithms.

A portable C++ library of multi-threaded STL algorithms (transform, accumulate...) using standard containers and iostreams. Thread, mutex, spinlock are templatized. Close to Intel Threading Building Blocks, HPC++ or PSTL. Idea of A.Stepanov and M.Austen.

DMTL (Data Mining Template Library) - A generic C++ based library for mining structured patterns such as sets, sequences, trees and graphs. The library provides implementation of popular frequent pattern mining algorithms.

OpenANN is a basic artificial neural network toolset. It is not being actively maintained. For performance neural networking, consider an alternative (such as https://sourceforge.net/projects/openann-project or https://www.tensorflow.org)

OpenDino is an open source Java platform for optimization, design of experiment and learning. It provides a graphical user interface (GUI) and a platform which simplifies integration of new algorithms as "Modules". Implemented Modules Evolutionary Algorithms: - CMA-ES - (1+1)-ES - Differential Evolution Deterministic optimization algorithm: - SIMPLEX Learning: - a simple Artificial Neural Net Optimization problems: - test functions - interface for executing other programs (solvers) - parallel execution of problems - distributed execution of problems via socket connection between computers Others: - data storage - data analyser and viewer

Tiny-DSP library contains c sources of a fast, tiny, portable and generic FFT (Fast Fourier transform) and inverse FFT. Supported are all power of two sizes (like 2,4,8,16,32,...) for one and two dimensional floating point arrays.

Currently two way astar is implemented. For those interested I have uploaded a patch of this for pgrouting v1.05 moved to https://github.com/sroycode/tway

WhiteHawk Project: A GNU/Linux Desktop environment for newbies trying to improve the new user experience by giving easy to use applications and games

a sandbox for trying my engine ideas

AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.

This is example code that I reference in my blogs on software development.

ADiV is a set of components for LAMW that uses JAVA and Pascal. It stands out for the simplicity of programming, thanks to the use of Pascal and hiding the Java Android code.